Import issues with CETAF identifiers - Revision history

bwf>Andreas Plank: /* snsb.info (SNSB) */ done

2020-10-14T08:26:42Z

 snsb.info (SNSB): done

@@ Line 12: / Line 12: @@
 __TOC__
 == data.biodiversitydata.nl (Naturalis) ==
@@ Line 263: / Line 252: @@
 * http://herbarium.bgbm.org/data/rdf/B100000627 --[[User:Andreas Plank|Andreas Plank]] ([[User talk:Andreas Plank|talk]]) 16:21, 30 January 2020 (CET) {{done}} --[[User:Andreas Plank|Andreas Plank]] ([[User talk:Andreas Plank|talk]]) 11:45, 3 February 2020 (CET)
 </blockquote>

bwf>Andreas Plank: /* snsb.info (SNSB) */ better explained

2020-10-12T10:22:17Z

snsb.info (SNSB): better explained

← Older revision		Revision as of 12:22, 12 October 2020
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	== snsb.info ({{abbr\|SNSB}}) ==		== snsb.info ({{abbr\|SNSB}}) ==

	{{Tobedone\|Pending}} Mistakes of naming RDF ~~data~~ properties are sometimes mixed with [[CSPP#CSPP_Elements\|{{abbr\|CSPP}}-Element names]], e.g. dwc~~-namespaces etc.~~; by using:<br /><!--		{{Tobedone\|Pending}} Mistakes of naming RDF elements/properties: they are sometimes mixed with [[CSPP#CSPP_Elements\|{{abbr\|CSPP}}-Element names]], e.g. dwc:kindOfMaterial but with “kindOfMaterial” being meant the CSPP element name only, not the designated property (code) term; I found the following mistakes (considered using the following prefixes) :<br /><!--
	--><code><nowiki>PREFIX dwc: <http://rs.tdwg.org/dwc/terms/></nowiki></code> and <!--		--><code><nowiki>PREFIX dwc: <http://rs.tdwg.org/dwc/terms/></nowiki></code> and <!--
	--><code><nowiki>PREFIX dcterms: <http://purl.org/dc/terms/></nowiki></code><br /> … the following elements are mistaken for instance and do not resolve:		--><code><nowiki>PREFIX dcterms: <http://purl.org/dc/terms/></nowiki></code><br /> … the following elements are mistaken for instance and do not resolve:
Line 21:		Line 21:
	* <code><nowiki><dwc:collectionDate></nowiki></code> => <code><nowiki><dcterms:created></nowiki></code>		* <code><nowiki><dwc:collectionDate></nowiki></code> => <code><nowiki><dcterms:created></nowiki></code>
	* <code><nowiki><dwc:sourceLink></nowiki></code> => <code><nowiki><dcterms:publisher></nowiki></code>		* <code><nowiki><dwc:sourceLink></nowiki></code> => <code><nowiki><dcterms:publisher></nowiki></code>
			Perhaps there are more RDF elements to fix.
	--[[User:Andreas Plank\|Andreas Plank]] ([[User talk:Andreas Plank\|talk]]) 15:22, 8 October 2020 (CEST)		--[[User:Andreas Plank\|Andreas Plank]] ([[User talk:Andreas Plank\|talk]]) 15:22, 8 October 2020 (CEST)

bwf>Andreas Plank at 13:22, 8 October 2020

2020-10-08T13:22:16Z

← Older revision		Revision as of 15:22, 8 October 2020
Line 12:		Line 12:

	__TOC__		__TOC__

			== snsb.info ({{abbr\|SNSB}}) ==

			{{Tobedone\|Pending}} Mistakes of naming RDF data properties are sometimes mixed with [[CSPP#CSPP_Elements\|{{abbr\|CSPP}}-Element names]], e.g. dwc-namespaces etc.; by using:<br /><!--
			--><code><nowiki>PREFIX dwc: <http://rs.tdwg.org/dwc/terms/></nowiki></code> and <!--
			--><code><nowiki>PREFIX dcterms: <http://purl.org/dc/terms/></nowiki></code><br /> … the following elements are mistaken for instance and do not resolve:
			* <code><nowiki><dwc:kindOfMaterial></nowiki></code> => <code><nowiki><dcterms:type></nowiki></code>
			* <code><nowiki><dwc:collectionDate></nowiki></code> => <code><nowiki><dcterms:created></nowiki></code>
			* <code><nowiki><dwc:sourceLink></nowiki></code> => <code><nowiki><dcterms:publisher></nowiki></code>
			--[[User:Andreas Plank\|Andreas Plank]] ([[User talk:Andreas Plank\|talk]]) 15:22, 8 October 2020 (CEST)

	== data.biodiversitydata.nl (Naturalis) ==		== data.biodiversitydata.nl (Naturalis) ==

bwf>Andreas Plank: /* specimens.kew.org (RBGK) */ added issue #specimens.kew.org fix ISO-8859 encoding to be UTF-8

2020-08-11T11:17:44Z

specimens.kew.org (RBGK): added issue #specimens.kew.org fix ISO-8859 encoding to be UTF-8

@@ Line 132: / Line 132: @@
 # </body></html>
 </syntaxhighlight>
 </blockquote>

bwf>Andreas Plank: /* specimens.kew.org (RBGK) */ done nesting problem of dc:relation

2020-08-10T10:23:55Z

specimens.kew.org (RBGK): done nesting problem of dc:relation

← Older revision		Revision as of 12:23, 10 August 2020
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	</blockquote>		</blockquote>

	({{~~Tobedone~~}}) Requested RDF has <tt>dc:relation</tt> nesting mistake: it is meant to be only inside <syntaxhighlight lang="xml" style="font-size:smaller;" inline><rdf:Description rdf:about="..." ><!-- data --><dc:relation><!-- related rdf:Description nests here --></dc:relation><!-- data --></rdf:Description></syntaxhighlight>, e.g.:		({{Done}}) Requested RDF has <tt>dc:relation</tt> nesting mistake: it is meant to be only inside <syntaxhighlight lang="xml" style="font-size:smaller;" inline><rdf:Description rdf:about="..." ><!-- data --><dc:relation><!-- related rdf:Description nests here --></dc:relation><!-- data --></rdf:Description></syntaxhighlight>, e.g.:
	<blockquote>		<blockquote>
	Perhaps [[Questions, problem solutions and further discussions (Guide of best practices)#develop RDF via TriG format or use it as dump data storage\|develop RDF via TriG format (on Questions, problem solutions and further discussions (Guide of best practices))]] helps here ? --[[User:Andreas Plank\|Andreas Plank]] ([[User talk:Andreas Plank\|talk]]) 13:30, 16 July 2020 (CEST)		Perhaps [[Questions, problem solutions and further discussions (Guide of best practices)#develop RDF via TriG format or use it as dump data storage\|develop RDF via TriG format (on Questions, problem solutions and further discussions (Guide of best practices))]] helps here ? --[[User:Andreas Plank\|Andreas Plank]] ([[User talk:Andreas Plank\|talk]]) 13:30, 16 July 2020 (CEST)
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	</syntaxhighlight></td></tr>		</syntaxhighlight></td></tr>
	</table>		</table>

			Done --[[User:Andreas Plank\|Andreas Plank]] ([[User talk:Andreas Plank\|talk]]) 12:23, 10 August 2020 (CEST)
	</blockquote>		</blockquote>

bwf>Andreas Plank: /* specimens.kew.org (RBGK) */ link TriG format more in context

2020-07-16T12:07:53Z

specimens.kew.org (RBGK): link TriG format more in context

← Older revision		Revision as of 14:07, 16 July 2020
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	({{Tobedone}}) Requested RDF has <tt>dc:relation</tt> nesting mistake: it is meant to be only inside <syntaxhighlight lang="xml" style="font-size:smaller;" inline><rdf:Description rdf:about="..." ><!-- data --><dc:relation><!-- related rdf:Description nests here --></dc:relation><!-- data --></rdf:Description></syntaxhighlight>, e.g.:		({{Tobedone}}) Requested RDF has <tt>dc:relation</tt> nesting mistake: it is meant to be only inside <syntaxhighlight lang="xml" style="font-size:smaller;" inline><rdf:Description rdf:about="..." ><!-- data --><dc:relation><!-- related rdf:Description nests here --></dc:relation><!-- data --></rdf:Description></syntaxhighlight>, e.g.:
	<blockquote>		<blockquote>
	Perhaps [[Questions, problem solutions and further discussions (Guide of best practices)#develop RDF via TriG format or use it as dump data storage]] helps here ? --[[User:Andreas Plank\|Andreas Plank]] ([[User talk:Andreas Plank\|talk]]) 13:30, 16 July 2020 (CEST)		Perhaps [[Questions, problem solutions and further discussions (Guide of best practices)#develop RDF via TriG format or use it as dump data storage\|develop RDF via TriG format (on Questions, problem solutions and further discussions (Guide of best practices))]] helps here ? --[[User:Andreas Plank\|Andreas Plank]] ([[User talk:Andreas Plank\|talk]]) 13:30, 16 July 2020 (CEST)

	The following example compares the actual RDF (left) and the <code>diff</code> command line tool (right) from Linux of <syntaxhighlight lang="bash" style="font-size:smaller;" inline>wget --header='Accept: application/rdf+xml' --content-on-error --output-document="K000001005.rdf" "http://specimens.kew.org/herbarium/K000001005"</syntaxhighlight>		The following example compares the actual RDF (left) and the <code>diff</code> command line tool (right) from Linux of <syntaxhighlight lang="bash" style="font-size:smaller;" inline>wget --header='Accept: application/rdf+xml' --content-on-error --output-document="K000001005.rdf" "http://specimens.kew.org/herbarium/K000001005"</syntaxhighlight>

bwf>Andreas Plank: /* specimens.kew.org (RBGK) */ added help link (use TriG format to develope); text more clearly(?)

2020-07-16T11:30:49Z

specimens.kew.org (RBGK): added help link (use TriG format to develope); text more clearly(?)

← Older revision		Revision as of 13:30, 16 July 2020
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	({{Tobedone}}) Requested RDF has <tt>dc:relation</tt> nesting mistake: it is meant to be only inside <syntaxhighlight lang="xml" style="font-size:smaller;" inline><rdf:Description rdf:about="..." ><!-- data --><dc:relation><!-- related rdf:Description nests here --></dc:relation><!-- data --></rdf:Description></syntaxhighlight>, e.g.:		({{Tobedone}}) Requested RDF has <tt>dc:relation</tt> nesting mistake: it is meant to be only inside <syntaxhighlight lang="xml" style="font-size:smaller;" inline><rdf:Description rdf:about="..." ><!-- data --><dc:relation><!-- related rdf:Description nests here --></dc:relation><!-- data --></rdf:Description></syntaxhighlight>, e.g.:
	<blockquote>		<blockquote>
	~~For~~ diff ~~example under~~ Linux ~~from~~ <syntaxhighlight lang="bash" style="font-size:smaller;" inline>wget --header='Accept: application/rdf+xml' --content-on-error --output-document="K000001005.rdf" "http://specimens.kew.org/herbarium/K000001005"</syntaxhighlight>		Perhaps [[Questions, problem solutions and further discussions (Guide of best practices)#develop RDF via TriG format or use it as dump data storage]] helps here ? --[[User:Andreas Plank\|Andreas Plank]] ([[User talk:Andreas Plank\|talk]]) 13:30, 16 July 2020 (CEST)

			The following example compares the actual RDF (left) and the <code>diff</code> command line tool (right) from Linux of <syntaxhighlight lang="bash" style="font-size:smaller;" inline>wget --header='Accept: application/rdf+xml' --content-on-error --output-document="K000001005.rdf" "http://specimens.kew.org/herbarium/K000001005"</syntaxhighlight>
	<table class="vertical-align-top">		<table class="vertical-align-top">
	<tr><td>The ~~(CETAF-ID)~~ <nowiki></rdf:Description></nowiki> ending in line 36 must ~~wrap~~ all the <nowiki><dc:relation></nowiki> and all other elements:		<tr><td style="max-width:600px">The <nowiki></rdf:Description></nowiki> (of the CETAF-ID) ending in line 36 should end much later and must envelop all the <nowiki><dc:relation></nowiki> and all other elements accordingly:
	<syntaxhighlight lang="xml" line start="35" highlight="2" style="font-size:smaller;">		<syntaxhighlight lang="xml" line start="35" highlight="2" style="font-size:smaller;">
	<dwc:locationRemarks>in umbrosis.</dwc:locationRemarks>		<dwc:locationRemarks>in umbrosis.</dwc:locationRemarks>
Line 157:		Line 159:
	</syntaxhighlight>		</syntaxhighlight>
	</td>		</td>
	<td><div style="text-align:center;">Using <code>diff</code> to illustrate it, line 33 moves to ~~line 46~~:</div>		<td><div style="text-align:center;">Using <code>diff</code> to illustrate it, the <nowiki></rdf:Description></nowiki> counting from line 33 on in line 36, moves to the very bottom before <nowiki></rdf:RDF></nowiki>:</div>
	<syntaxhighlight lang="diff" style="font-size:smaller;">		<syntaxhighlight lang="diff" style="font-size:smaller;">
			--- K000001005.rdf 2020-07-16 10:25:35.236116113 +0200
	+++ K000001005-fixed.rdf 2020-07-16 10:40:30.246263344 +0200		+++ K000001005-fixed.rdf 2020-07-16 10:40:30.246263344 +0200
	@@ -33,7 +33,6 @@		@@ -33,7 +33,6 @@

bwf>Andreas Plank: /* specimens.kew.org (RBGK) */ correct diff

2020-07-16T09:02:05Z

specimens.kew.org (RBGK): correct diff

← Older revision		Revision as of 11:02, 16 July 2020
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	</syntaxhighlight>		</syntaxhighlight>
	</td>		</td>
	<td><div style="text-align:center;">Using <code>diff</code> to illustrate it, line 33 moves to line 45:</div>		<td><div style="text-align:center;">Using <code>diff</code> to illustrate it, line 33 moves to line 46:</div>
	<syntaxhighlight lang="diff" style="font-size:smaller;">		<syntaxhighlight lang="diff" style="font-size:smaller;">
	~~---~~ K000001005-fixed.rdf 2020-07-16 10:40:30.246263344 ~~+0200~~		+++ K000001005-fixed.rdf 2020-07-16 10:40:30.246263344 +0200
	~~+++ K000001005.rdf 2020-07-16 10:25:35.236116113~~ +0200		@@ -33,7 +33,6 @@
	@@ -33,6 +33,7 @@
	<dwc:recordNumber>0</dwc:recordNumber>		<dwc:recordNumber>0</dwc:recordNumber>
	<dwc:country>Bahia</dwc:country>		<dwc:country>Bahia</dwc:country>
	<dwc:locationRemarks>in umbrosis.</dwc:locationRemarks>		<dwc:locationRemarks>in umbrosis.</dwc:locationRemarks>
	+</rdf:Description>		-</rdf:Description>
	<!-- Image associated with the specimen -->		<!-- Image associated with the specimen -->
	<dc:relation>		<dc:relation>
	<rdf:Description rdf:about="http://www.kew.org/herbcatimg/588771.jpg">		<rdf:Description rdf:about="http://www.kew.org/herbcatimg/588771.jpg">
	@@ -45,5 ~~+46,4~~ @@		@@ -46,4 +45,5 @@
	</rdf:Description>		</rdf:Description>
	</dc:relation>		</dc:relation>
	<dwc:associatedMedia rdf:resource="http://www.kew.org/herbcatimg/588771.jpg"/>		<dwc:associatedMedia rdf:resource="http://www.kew.org/herbcatimg/588771.jpg"/>
	-</rdf:Description>		+</rdf:Description>
	</rdf:RDF>		</rdf:RDF>
	</syntaxhighlight></td></tr>		</syntaxhighlight></td></tr>
	</table>		</table>
	</blockquote>		</blockquote>


	=== purl.org/nhmuio ({{abbr\|NHMUO}}) ===		=== purl.org/nhmuio ({{abbr\|NHMUO}}) ===

bwf>Andreas Plank: /* specimens.kew.org (RBGK) */ +issue of dc:relation

2020-07-16T08:58:24Z

 specimens.kew.org (RBGK): +issue of dc:relation

@@ Line 114: / Line 114: @@
 --[[User:Andreas Plank|Andreas Plank]] ([[User talk:Andreas Plank|talk]]) 12:29, 20 February 2020 (CET)
 </blockquote>
 === purl.org/nhmuio ({{abbr|NHMUO}}) ===
 ({{Tobedone}}) The requested RDF does not describe the requested {{abbr|CETAF-ID}} <code><nowiki>http://purl.org/nhmuio/id/41d9cbb4-4590-4265-8079-ca44d46d27c3</nowiki></code> itself, the ID “hangs somewhat in the air” (from a descriptive point of view):
 <blockquote>
@@ Line 132: / Line 198: @@
 <blockquote>
 For instance under Linux:
-<syntaxhighlight lang="bash">
+<syntaxhighlight lang="bash" style="font-size:smaller;">
 wget --header='Accept: application/rdf+xml'  --content-on-error --output-document="col.smns-bw.org⁄object⁄S10000227722006.rdf" "http://col.smns-bw.org/object/S10000227722006"
 file col.smns-bw.org⁄object⁄S10000227722006.rdf
 # col.smns-bw.org⁄object⁄S10000227722006.rdf: HTML document, ISO-8859 text, with very long lines, with CRLF line terminators
 </syntaxhighlight>
 </blockquote>

bwf>Andreas Plank: /* coldb.mnhn.fr (MNHN) */ +unicode issues

2020-07-09T12:57:50Z

coldb.mnhn.fr (MNHN): +unicode issues

← Older revision		Revision as of 14:57, 9 July 2020
Line 34:		Line 34:
	:* characters that can not be guessed properly will be replaced by a question mark “?” at that position where the wrong unicode character was before		:* characters that can not be guessed properly will be replaced by a question mark “?” at that position where the wrong unicode character was before

	{{Tobedone\|Pending}} unicode/XML issues:		{{Tobedone\|Pending}} unicode/XML issues (but most will be ignored as these are no plant records to be used for the botany pilot):
	* http://coldb.mnhn.fr/catalognumber/mnhn/f/dac98.2 see ? <syntaxhighlight lang="xml" inline><dwc:municipality>Szirdokpisp?Ki</dwc:municipality></syntaxhighlight><!--		* http://coldb.mnhn.fr/catalognumber/mnhn/f/dac98.2 see ? <syntaxhighlight lang="xml" inline><dwc:municipality>Szirdokpisp?Ki</dwc:municipality></syntaxhighlight><!--
	--><br /><code>rdfparse</code> found: [line: …, col: 34] An invalid XML character (Unicode: 0x19) was found in the element content of the document		--><br /><code>rdfparse</code> found: [line: …, col: 34] An invalid XML character (Unicode: 0x19) was found in the element content of the document
Line 71:		Line 71:
	* http://coldb.mnhn.fr/catalognumber/mnhn/ra/1991.4878 see ? in <syntaxhighlight lang="xml" inline><dwc:locality>R?mire</dwc:locality></syntaxhighlight><!--		* http://coldb.mnhn.fr/catalognumber/mnhn/ra/1991.4878 see ? in <syntaxhighlight lang="xml" inline><dwc:locality>R?mire</dwc:locality></syntaxhighlight><!--
	--><br /><code>rdfparse</code> found: [line: …, col: 20] An invalid XML character (Unicode: 0x1a) was found in the element content of the document.<!--		--><br /><code>rdfparse</code> found: [line: …, col: 20] An invalid XML character (Unicode: 0x1a) was found in the element content of the document.<!--
	--><br />R?mire => R?mire (perhaps Rémire ?)		--><br />R?mire => R?mire (perhaps Rémire ?))
			* http://coldb.mnhn.fr/catalognumber/mnhn/ra/1991.4926 see ? in <syntaxhighlight lang="xml" inline><dwc:locality>piste de St H?lie</dwc:locality></syntaxhighlight><!--
			--><br /><code>rdfparse</code> found: [line: …, col: 32] An invalid XML character (Unicode: 0x1a) was found in the element content of the document..<!--
			--><br />H?lie => H?lie

	== data.rbge.org.uk ({{abbr\|RBGE}}) ==		== data.rbge.org.uk ({{abbr\|RBGE}}) ==